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Example AIRR Dataset for V(D)J Analysis

demo_airr.Rd

The demo_airr object is a list of AIRR data frames from a down-sampled demo dataset derived from Suo et al., 2024, Nature Biotechnology. This dataset is used in vignettes to demonstrate workflows for V(D)J analysis. For details, see the original publication at https://www.nature.com/articles/s41587-023-01734-7. The original files are available at https://github.com/zktuong/dandelion-demo-files.

Usage

data(demo_airr)

Format

A SingleCellExperiment object with the following slots:

list

List of DataFrames containing the standardised AIRR data for each sample. For information of AIRR rearrangements, see the AIRR Community standards at https://docs.airr-community.org/en/stable/datarep/rearrangements.html.

Source

Suo et al., 2024, Nature Biotechnology. https://www.nature.com/articles/s41587-023-01734-7.

Examples

data(demo_airr)