Package index
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demo_airr - Example AIRR Dataset for V(D)J Analysis
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demo_sce - Example SCE Dataset that does not contain V(D)J information
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differentiationProbabilities() - Compute Branch Probabilities Using Markov Chain
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markovProbability() - Markov Chain Construction and Probability Calculation
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miloUmap() - Perform UMAP on the Adjacency Matrix of a Milo Object
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projectProbability() - Project Probabilities from Markov Chain to Pseudobulks
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projectPseudotimeToCell() - Project Pseudotime and Branch Probabilities to Single Cells
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sce_vdj - Example Dataset for V(D)J Analysis
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setupVdjPseudobulk() - Preprocess V(D)J Data for Pseudobulk Analysis
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vdjPseudobulk() - Generate Pseudobulk V(D)J Feature Space